Articles

The Evidence for New Species Across the Tree of Life: Morphology Still Rules the Largest Kingdoms

Adam Ziegler, Xin Li and John Wiens

2025-08-01 Volume 4 • Issue 1 • 2025

Global Integration of Phylogenomic Data and Fine-Scale Partitioning Strategies Refine the Evolutionary Tree of Adephaga Beetles

Cody Raul Cardenas, Emmanuel Toussaint, Grey Gustafson, Cody Raul Cardenas, Grey Gustafson and Emmanuel Toussaint

2025-07-16 Volume 4 • Issue 1 • 2025

What Is an Eared Nightjar? Ultraconserved Elements Clarify the Evolutionary Relationships of Eurostopodus and Lyncornis Nightjars (Aves: Caprimulgidae)

Jenna McCullough, Lucas DeCicco, David Boseto, Robert Moyle, Michael Andersen, Jenna M. McCullough, Lucas H. DeCicco, David Boseto, Robert G. Moyle and Michael J. Andersen

2025-06-18 Volume 4 • Issue 1 • 2025

Seeing the Network for the Trees: Methodological and Empirical Advances in Reticulate Evolution

Claudia Solís-Lemus, George Tiley, Claudia Solís-Lemus and George Tiley

2025-04-16 Volume 4 • Issue 1 • 2025

A New Lower Permian Ray-Finned Fish (Actinopterygii) From South Dakota and the Use of Tree Space to Find Rogue Taxa in Phylogenetic Analysis of Morphological Data

Jack Stack, Michael Gottfried, Michelle Stocker, Jack Stack, Michael Gottfried and Michelle Stocker

2025-04-01 Volume 3 • Issue 2 • 2024

Sources of Gene Tree Discordance and Their Implications for Systematics and Evolution of a Megadiverse Australian Plant Radiation (Subtribe Hakeinae, Proteaceae)

Alexander Skeels, Hervé Sauquet, Austin Mast, Peter Weston, Peter Olde, Zoe Reynolds, Jéssica Fenker, Alan Lemmon, Emily Moriarty Lemmon, Marcel Cardillo, Alexander Skeels, Hervé Sauquet, Austin Mast, Peter Weston, Peter Olde, Zoe Reynolds, Jéssica Fenker, Alan Lemmon, Emily Moriarty Lemmon and Marcel Cardillo

2025-03-20 Volume 3 • Issue 2 • 2024

A Likelihood Ratio Test for Hybridization Under the Multispecies Coalescent

Jing Peng, Sungsik Kong, Laura Kubatko, Jing Peng, Sungsik Kong and Laura Kubatko

2024-12-03 Volume 3 • Issue 2 • 2024

Bayesian Total-Evidence Dating Reshapes the Age and Historical Biogeography of Parnassiinae

Noémie M-C. Hévin [No Last Name], Fabien L. Condamine [No Last Name], Noémie M-C. Hévin and Fabien L. Condamine

2024-12-02 Volume 3 • Issue 2 • 2024

Detectability of Varied Hybridization Scenarios Using Genome-Scale Hybrid Detection Methods

Marianne B. Bjorner, Erin K. Molloy, Colin N. Dewey, Claudia Solis-Lemus, Marianne B. Bjorner, Erin K. Molloy, Colin N. Dewey and Claudia Solis-Lemus

2024-10-21 Volume 3 • Issue 1 • 2024

Half of the Diversity Undescribed: Integrative Taxonomy Reveals 32 New Species and a High Cryptic Diversity in the Scopariinae and Crambinae of the Philippines (Lepidoptera: Crambidae)

Théo Léger and Théo Léger

2024-10-16 Volume 3 • Issue 2 • 2024

Phylogeography of the Island Leaf Warbler (Aves: Phylloscopus Poliocephalus) in Northern Melanesia Reveals Rapid Secondary Sympatry or Ecological Speciation on Kolombangara Island, Solomon Islands

Lucas DeCicco, Devon DeRaad, Piokera Holland, Douglas Pikacha, Ikuo Tegulu, Reuben Tako, David Boseto, Paul Sweet, Michael Andersen, Robert Moyle, Lucas DeCicco, Devon DeRaad, Piokera Holland, Douglas Pikacha, Ikuo Tegulu, Reuben Tako, David Boseto, Paul Sweet, Michael Andersen and Robert Moyle

2024-10-01 Volume 3 • Issue 2 • 2024

The Impact of Model Misspecification on Phylogenetic Network Inference

Zhen Cao, Meng Li, Huw Ogilvie, Luay Nakhleh, Zhen Cao, Meng Li, Huw Ogilvie and Luay Nakhleh

2024-09-30 Volume 3 • Issue 1 • 2024

Phylogenetic Systematics of the Shieldtail Snake Genus Teretrurus Beddome, 1886 (Squamata, Uropeltidae) Reveals Extensive Cryptic Diversity and Novel Geographic Spread in the Western Ghats of India

Vivek Cyriac, S.R. Ganesh, Zeba Madani, Avrajjal Ghosh, Vidisha Kulkarni, Kartik Shanker, Vivek Cyriac, S.R. Ganesh, Zeba Madani, Avrajjal Ghosh, Vidisha Kulkarni and Kartik Shanker

2024-08-21 Volume 3 • Issue 2 • 2024

The Democratization of Systematic Biology

Maureen Kearney, Katharina Dittmar, Maureen Kearney and Katharina Dittmar

2024-08-21 Volume 3 • Issue 2 • 2024

Distinguishing Between Histories of Speciation and Introgression Using Genomic Data

Mark Hibbins, Matthew Hahn, Mark Hibbins and Matthew Hahn

2024-07-11 Volume 3 • Issue 1 • 2024

Genome-wide Data Reinforces the Evolutionary Relationships of Previously Problematic Earless Lizards (Phyrnosomatidae: Holbrookia)

Thomas Firneno, Corey Roelke, Adam Leaché, Nathan Rains, Toby Hibbitts, Wade Ryberg, Travis Laduc, Sonal Singhal, Matthew Fujita, Thomas Firneno, Corey Roelke, Adam Leaché, Nathan Rains, Toby Hibbitts, Wade Ryberg, Travis Laduc, Sonal Singhal and Matthew Fujita

2024-07-11 Volume 3 • Issue 2 • 2024

Species and Speciation in the Termite-Cultivated Fungus Termitomyces.

Lennart van de Peppel, Wilhelm de Beer, N’Golo Koné, Duur Aanen, Lennart van de Peppel, Wilhelm de Beer, N’Golo Koné and Duur Aanen

2024-07-10 Volume 3 • Issue 2 • 2024

Ancient Introgression in Mouse Lemurs (Microcebus: Cheirogaleidae) Explains 20 Years of Phylogenetic Uncertainty

Blake Fauskee, Andrew Crowl, Bryan Piatkowski, Anne Yoder, George Tiley, Blake Fauskee, Andrew Crowl, Bryan Piatkowski, Anne Yoder and George Tiley

2024-07-02 Volume 3 • Issue 1 • 2024

A Cnidarian Phylogenomic Tree Fitted With Hundreds of 18S Leaves

Melissa B. DeBiasse, Ariane Buckenmeyer, Jason Macrander, Leslie S. Babonis, Bastien Bentlage, Paulyn Cartwright, Carlos Prada, Adam M. Reitzel, Sergio N. Stampar, Allen Collins, Marymegan Daly, Joseph Ryan, Melissa B. DeBiasse, Ariane Buckenmeyer, Jason Macrander, Leslie S. Babonis, Bastien Bentlage, Paulyn Cartwright, Carlos Prada, Adam M. Reitzel, Sergio N. Stampar, Allen Collins, Marymegan Daly and Joseph Ryan

2024-04-10 Volume 3 • Issue 2 • 2024